QAAPT is a free web-based platform developed by CAPTURA for the analysis of AMR data.
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Course Name: WHONET & QAAPT: Level 2 for Experts

Description

In this course, you will gain a comprehensive understanding of WHONET, including troubleshooting common issues, BacLink data conversion, and advanced features; QAAPT qLoad for data integration, as well as generating trends, patterns, and antibiograms. This course is specifically designed for the Institute for Medical Research and the National Institutes of Health, Malaysia.

WHONET is a free desktop Windows application for the management and analysis of microbiology laboratory data with a particular focus on antimicrobial resistance surveillance developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance at the Brigham and Women's Hospital in Boston, Massachusetts.

QAAPT, which stands for Quick Analysis of Antimicrobial Patterns and Trends, is a free, web-based tool for visualizing antimicrobial resistance data. Developed by the CAPTURA project, QAAPT is designed for use by decision-makers, including healthcare professionals, national AMR coordinators, microbiologists, technologists, and practitioners involved in AMR surveillance or microbiology laboratory work. It seamlessly integrates with WHONET software, allowing for the direct importation of WHONET SQLITE and CSV files.

QAAPT AMR Academy
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Course Content

  • Day 01 10 Oct 2024
  • Day 02 11 Oct 2024
  • Day 1: Session Plan
    # Time Session Speaker Duration
    1 8.00 – 9.00 am Registration for participants All Participants 60 Min
    2 9.00 – 9.20 am Overview of National Antibiotic Surveillance report Dr. Rohaidah Hashim 20 Min
    3 9.20 – 9.30 am Introduction to the Resource Person Dr. Rohaidah Hashim, Julhas Sujan 10 Min
    4 9.30 – 10.00 am Tea break
    5 10.00 – 10.15 am Pre-Test using SurveyAMR.com platform All Participants 15 Min
    6 10.15 – 11.15 am
    • - AMR data management cycle
    • - Introduction to WHONET
    • - WHONET Download, Installation, Configuration and Data Entry
    • - Julhas Sujan, Data Science Engineer, IVI
    		60 Min
    7 11.15 – 12.30 noon
    • - BacLink conversion (Configuration, Data conversion, and Code mapping)
    • - Sample dataset download
    • - Dataset preparation
    • - Open BacLink software
    • - New file format configuration
    • - Antibiotics mapping
    • - Data fields mapping
    • - Location mapping
    • - Saving configuration
    • - Running conversion
    • - Inspecting conversion
    • - Update unrecognized codes
    • - Editing configuration
    • - And open with WHONET file to analyze data
    • -Julhas Sujan
    		 75 Min
    8 12.30 – 2.00 pm Lunch Break
    9 2.00 – 3.00 pm
    • - BacLink Practice by all participants
    • - WHONET data export as CSV/Excel file
    • - Data Analysis
    • - Julhas Sujan
    		60 Min
    10 3.00 – 3.30 pm Tea Break
    11 3.30-4.30pm
    • - Data analysis - Quick analysis
    • - WHONET Standard Report
    • - Patient and sample statistics
    • - Organism and antibiotic statistics
    • - Isolate alerts
    • - Epidemiology Report (CAPTURA)
    • -Test practice and quality report
    • -Julhas Sujan
    		60 Min
    12 4.30 - 5.00 pm
    • - Data analysis - Custom reporting by Organism and Isolates
    • - Isolate listing and summary
    • - %RIS and test measurements
    • - Resistance profile
    • - Microbiological alerts
    • - Saving Results
    • - GLASS Reporting
    • - Homework
    • -Julhas Sujan
    		30 Min
  • Resources: Introduction to International Vaccine Institute
  • Pre Test Questionnaire
  • Resources: AMR Data Management Best Practices and Tools
  • Resources: Statistical Methods for Antimicrobial Susceptibility Testing Data
  • Resources: Introduction to WHONET
  • Resources: WHONET Download, Installation and Laboratory Configuration, Data entry, BacLink Conversion (User Manual)
  • SQLite Browser to Export WHONET data as CSV format
    Download: https://sqlitebrowser.org/dl/
  • Video: WHONET Download and Installation
  • Sample Dataset for BacLink Conversion
    Download: click here
  • Day 2: Session Plan
    # Time Session Speaker Duration
    1 8.30 – 9.30 am
    • - Recap of Day 1
    • - Installation, configuration and BacLink issue resolve at the individual level participants
    • - Homework check
    		Julhas Sujan 60 Min
    2 9.30 – 10.00 am Tea break
    3 10.00 – 11.00 am
    • -WHONET Advanced analysis review
    • -Individual level issue resolve
    • -Julhas Sujan
    		60 Min
    4 11.00 – 12.30 am
    • - Major components of an antibiogram
    • - Introduction to QAAPT - Quick Analysis of Antimicrobial Resistance Patterns and Trends
    • - QAAPT registration
    • - QAAPT: Standard Reports
    • - QAAPT: Trends
    • - QAAPT: Patterns
    • - QAAPT: Antibiogram
    • - QAAPT: MDR
    • -Julhas Sujan
    		60 Min
    5 12.30 – 2.30 pm Lunch and Prayer Break
    6 2.30 – 3.30 pm
    • - QAAPT: qLoad data conversion
    • - QAAPT: data analysis using own dataset
    • -Julhas Sujan
    		60 Min
    7 3.30 – 4.30 pm
    • - Final Test (20 min) using SurveyAMR.com platform
    • - Training Evaluation/ Feedback (10 min)
    • - Future support channel
    • - Closing remarks
    • -Julhas Sujan
    • -Dr. Rohaidah Hashim
    		60 Min
  • Resources: AMR Data Interpretation
  • Resources: QAAPT Introduction
  • Final Test
  • Training evaluation (https://surveyamr.com/): Please use the default email as evaluation@surveyamr.com